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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38525278_38528510_F

Intron Information:

Intron Rank:
137558
Intron Class:
major
Intron Phase:
Intron Coordinates:
38525278 - 38528510
Intron Length:
3233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.7
0.69
0.8
75.1
33
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
74
0.83
1.5
89.57
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024065
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043379
38524497 - 38538994
14498