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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38578604_38583383_F

Intron Information:

Intron Rank:
128196
Intron Class:
major
Intron Phase:
Intron Coordinates:
38578604 - 38583383
Intron Length:
4780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATTATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.7
0.89
0.7
84.3
29.4
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
62.8
0.38
1.5
69.46
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019034
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031302
38574557 - 38583940
9384