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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38684134_38686886_R

Intron Information:

Intron Rank:
152382
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
38684134 - 38686886
Intron Length:
2753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATAGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATGATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1
67.2
38.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
48.2
-0.2
3.2
69.4
43.7
Minor BPS
53.3
0.18
1.7
69.93
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029584
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026582
38683450 - 38687642
4193