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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38873162_38907071_R

Intron Information:

Intron Rank:
143416
Intron Class:
major
Intron Phase:
Intron Coordinates:
38873162 - 38907071
Intron Length:
33910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ACTGATTATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
81.8
31.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.3
0.43
1
62.4
42.6
Minor 5ss
36.5
-1.5
2.7
46.6
41.8
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024465
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036919
38873118 - 38913273
40156