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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38907206_38913026_R

Intron Information:

Intron Rank:
143415
Intron Class:
major
Intron Phase:
Intron Coordinates:
38907206 - 38913026
Intron Length:
5821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCCTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.4
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.8
0.74
0.8
76.5
32.3
Minor 5ss
30.2
-2.3
3.7
45.9
49.3
Minor BPS
51.2
0.12
1.8
67.9
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024465
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036919
38873118 - 38913273
40156
ENSAPLT00000021976
38899843 - 38913273
13431