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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38961890_38963240_F

Intron Information:

Intron Rank:
133149
Intron Class:
major
Intron Phase:
Intron Coordinates:
38961890 - 38963240
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATCT
5'SS Class:
major
3'SS Sequence:
TTTTATTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGCCACATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
73.6
30.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
84.5
30
Minor 5ss
34.5
-1.8
3.2
48.3
47.4
Minor BPS
48.3
-0.1
1.8
58.63
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044712
38960198 - 38963592
3395