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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38961890_38987776_F

Intron Information:

Intron Rank:
133145
Intron Class:
major
Intron Phase:
Intron Coordinates:
38961890 - 38987776
Intron Length:
25887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATCT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
73.6
30.9
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
34.5
-1.8
3.2
48.3
47.4
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027517
38961810 - 38987904
26095