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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38983807_38989118_R

Intron Information:

Intron Rank:
133619
Intron Class:
major
Intron Phase:
Intron Coordinates:
38983807 - 38989118
Intron Length:
5312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTGCTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.3
66.6
44.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.4
0.75
0.8
77.2
35.8
Minor 5ss
38.7
-1.3
3
56.4
40.7
Minor BPS
63.7
0.43
1.4
72.11
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019160
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032925
38974956 - 38993336
18381