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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38987843_38989383_F

Intron Information:

Intron Rank:
133146
Intron Class:
major
Intron Phase:
Intron Coordinates:
38987843 - 38989383
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
57.5
0.23
1.9
75.53
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039847
38987777 - 38990212
2436