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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_38991151_38994579_R

Intron Information:

Intron Rank:
133622
Intron Class:
major
Intron Phase:
Intron Coordinates:
38991151 - 38994579
Intron Length:
3429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCACCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TCCTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
74.7
0.56
0.8
65.5
35.7
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
52.9
0.17
1.9
71.07
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019160
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046799
38974956 - 38998268
23313