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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39149132_39158456_F

Intron Information:

Intron Rank:
141558
Intron Class:
major
Intron Phase:
Intron Coordinates:
39149132 - 39158456
Intron Length:
9325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTGTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
ACTTTCTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
78.5
0.64
0.8
72.6
32.3
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
50.1
-0
2
64.27
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026232
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037404
39149082 - 39158527
9446