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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39158912_39159776_F

Intron Information:

Intron Rank:
141561
Intron Class:
major
Intron Phase:
Intron Coordinates:
39158912 - 39159776
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.1
41.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
38.3
-1.3
3
41.6
45.3
Minor BPS
42
-0.5
1.9
58.29
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026232
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044944
39157736 - 39160807
3072