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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39159212_39159776_F

Intron Information:

Intron Rank:
141553
Intron Class:
major
Intron Phase:
Intron Coordinates:
39159212 - 39159776
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
42
-0.5
1.9
58.29
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026232
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032778
39157736 - 39160807
3072
ENSAPLT00000030202
39157736 - 39160807
3072