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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39304113_39304241_R

Intron Information:

Intron Rank:
138735
Intron Class:
major
Intron Phase:
Intron Coordinates:
39304113 - 39304241
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTATTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGATCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.3
0.75
0.8
77.1
36.6
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
67.6
0.55
1.2
69.94
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022155
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034064
39303623 - 39318966
15344
ENSAPLT00000021850
39303623 - 39307089
3467