About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39304431_39307034_R

Intron Information:

Intron Rank:
138736
Intron Class:
major
Intron Phase:
Intron Coordinates:
39304431 - 39307034
Intron Length:
2604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.2
0.75
0.9
77.5
36.5
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
65.5
0.57
1.9
85.26
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022155
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021850
39303623 - 39307089
3467