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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39335880_39336515_R

Intron Information:

Intron Rank:
149483
Intron Class:
major
Intron Phase:
Intron Coordinates:
39335880 - 39336515
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CTTTGAAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
39.8
-0.7
2.2
55.94
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027917
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022046
39335721 - 39344368
8648