Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39437845_39446748_R

Intron Information:

Intron Rank:

129498

Intron Class:

major

Intron Phase:

Intron Coordinates:

39437845 - 39446748

Intron Length:

8904

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTTTTTATAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.2

1.14

0.6

93.2

14.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

1.06

0.5

96.7

11.4

Minor 5ss

43.8

-0.7

2.8

58.1

46.5

Minor BPS

58.9

0.36

1.7

76.11

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016864

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040552

39437595 - 39447744

10150