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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39460036_39462101_F

Intron Information:

Intron Rank:
135428
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
39460036 - 39462101
Intron Length:
2066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTATGTATG
5'SS Class:
weak_major
3'SS Sequence:
TCTTGTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CATTTTTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.4
65.3
46
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
76.3
37.7
Minor 5ss
46.4
-0.4
2.5
55
42.6
Minor BPS
50.7
0.1
1.7
69.16
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035305
39459898 - 39462898
3001