Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39462262_39462347_F

Intron Information:

Intron Rank:

135427

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

39462262 - 39462347

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAAGA

5'SS Class:

strong_major

3'SS Sequence:

GGATAATCAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGGAT

U12 Branch Point Sequence:

TTAGCATTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

74.1

36.4

Major BPS

71.4

0.53

1.4

71.4

45.1

Major PPT

56.1

0.14

1.1

48.3

43.6

Minor 5ss

32.2

-2

40.7

45.1

Minor BPS

51.9

0.14

73.9

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035305

39459898 - 39462898

3001

ENSAPLT00000017644

39456935 - 39462898

5964