Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39496306_39501802_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

39496306 - 39501802

Intron Length:

5497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTGGGATTT

5'SS Class:

major

3'SS Sequence:

GATCATAATGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCATAAT

U12 Branch Point Sequence:

GAAACCGAAACT

Flanking Amino Acid:

TCKIRGSIEVNDLLEERKNL

Intron Amino Acid Position:

1494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

71.3

Major BPS

75.2

0.63

1.1

74.5

36.6

Major PPT

52.1

0.05

1.2

50.6

41.6

Minor 5ss

38.7

-1.3

3.5

55.6

43.3

Minor BPS

45.6

-0.2

2.3

63.83

45.6

Associated Gene:

Gene:

ARAP2

Ensembl Gene ID:

ENSAPLG00000013894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014487

39496004 - 39612808

116805