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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3949644_3951308_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3949644 - 3951308
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
QYDFPSCSCVEQIIEKDEGP
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
76.5
0.6
1
74.1
39.5
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
TET2
Ensembl Gene ID:
ENSAPLG00000008329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008660
3946268 - 3966197
19930