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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39502027_39508151_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
39502027 - 39508151
Intron Length:
6125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GGTGGTGCAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCCTTCTCACAT
Flanking Amino Acid:
GVKKKMKPPTKWLFQDSFIC
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
47.5
-0.1
1.2
42.3
42.4
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
44.4
-0.3
1.9
56.14
46.4

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805