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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3951400_3954962_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3951400 - 3954962
Intron Length:
3563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TGTTTGTTTAAG
Flanking Amino Acid:
VAAIREIMEERFGQKGKAIR
Intron Amino Acid Position:
1141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
74.6
0.55
1.1
79.2
38.4
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
44.6
-0.5
2.4
56.75
44.4

Associated Gene:

Gene:
TET2
Ensembl Gene ID:
ENSAPLG00000008329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008660
3946268 - 3966197
19930