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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39522927_39523449_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39522927 - 39523449
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ACAGTATAAACT
Flanking Amino Acid:
KEPDCSIIIRVSPLTEAEEL
Intron Amino Acid Position:
1263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
76.9
33.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.8
0.69
0.9
73.8
40
Minor 5ss
31.2
-2.2
3
32.2
42.1
Minor BPS
45.2
-0.2
1.9
59.49
43.9

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805