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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39523525_39532950_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39523525 - 39532950
Intron Length:
9426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
CTTTCTTGTATT
Flanking Amino Acid:
SFITRWKDTQVSQAGDLLIE
Intron Amino Acid Position:
1238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
83.6
0.76
0.8
81.3
30.8
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
55.9
0.27
1.8
76.12
40.9

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805