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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_395344_399476_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
395344 - 399476
Intron Length:
4133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATGAC
U12 Branch Point Sequence:
TTGTTTTTACAG
Flanking Amino Acid:
REASRLQRGGGSKYFRTCAT
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
58
47.1
Major BPS
54.6
0.12
1.1
47.1
36.1
Major PPT
88.6
0.87
0.7
83.2
31.9
Minor 5ss
35.3
-1.7
3.3
38.2
46.7
Minor BPS
51.1
-0.1
1.8
59.4
43

Associated Gene:

Gene:
AP1AR
Ensembl Gene ID:
ENSAPLG00000013936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014532
395267 - 410869
15603