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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39534872_39535852_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39534872 - 39535852
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTTATTAATG
Flanking Amino Acid:
ELYPFWISALDMQNEKERVR
Intron Amino Acid Position:
1130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.8
0.74
0.9
80.9
36.4
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
63.2
0.28
1.7
67.84
40.3

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805