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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39536066_39538071_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39536066 - 39538071
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTTCTGTAACC
Flanking Amino Acid:
NSCIAFVTQYGLGSKQIYLK
Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
66.2
0.37
0.9
59.3
40.9
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
67.2
0.52
2
80.43
34.5

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805