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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39550560_39554679_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39550560 - 39554679
Intron Length:
4120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAG
5'SS Class:
major
3'SS Sequence:
TCTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTC
Flanking Amino Acid:
KLLTEKKLKEDCNKRWCTLE
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
63.4
42.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.7
80
30.9
Minor 5ss
39.7
-1.2
2.8
49.6
46.6
Minor BPS
68.6
0.56
1.5
76.34
34.2

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805