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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39562001_39584765_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39562001 - 39584765
Intron Length:
22765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ACTCTTTGAACT
Flanking Amino Acid:
NTVWICKNEQDFKTGFGITL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
77.8
0.63
0.8
77.1
31.6
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
58.8
0.36
1.4
72.14
38.8

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805