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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3956252_3957017_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3956252 - 3957017
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CTGCTGCTAACA
Flanking Amino Acid:
LTNRRCALNEERTCACQGLD
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
85.5
0.8
0.6
85.1
22.5
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
44
-0.4
2.3
56.65
42.7

Associated Gene:

Gene:
TET2
Ensembl Gene ID:
ENSAPLG00000008329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008660
3946268 - 3966197
19930