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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3959264_3961639_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3959264 - 3961639
Intron Length:
2376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TGTCTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGTTGTCTGATT
Flanking Amino Acid:
KLAPDAYNNQIEYEHRAPEC
Intron Amino Acid Position:
1323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
76.8
0.6
1
70
40.2
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
48.2
-0
2.1
72.08
39.4

Associated Gene:

Gene:
TET2
Ensembl Gene ID:
ENSAPLG00000008329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008660
3946268 - 3966197
19930