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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39597370_39611942_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
39597370 - 39611942
Intron Length:
14573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACTCAGATTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTGATT
Flanking Amino Acid:
PESSKVETSTSVLFLSSSHN
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
55.7
0.13
1.1
52.7
39.9
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
52.2
0.15
2.1
75.85
41.4

Associated Gene:

Gene:
ARAP2
Ensembl Gene ID:
ENSAPLG00000013894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014487
39496004 - 39612808
116805