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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3961778_3963128_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3961778 - 3963128
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTTACTCTAACA
Flanking Amino Acid:
LHNMQNGSTLVCTLTREDNR
Intron Amino Acid Position:
1369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
74.8
0.56
0.9
71.2
33.3
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
61.8
0.37
1.7
73.91
37.3

Associated Gene:

Gene:
TET2
Ensembl Gene ID:
ENSAPLG00000008329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008660
3946268 - 3966197
19930