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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39648912_39649485_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39648912 - 39649485
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTACTTTACTA
Flanking Amino Acid:
STKRICSDSSEALWDNLLFW
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.2
0.79
0.7
82.1
29.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
60.1
0.31
1.6
70.07
36.6

Associated Gene:

Gene:
DTHD1
Ensembl Gene ID:
ENSAPLG00000014119
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014698
39630869 - 39650553
19685