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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39768751_39772846_F

Intron Information:

Intron Rank:
126554
Intron Class:
major
Intron Phase:
Intron Coordinates:
39768751 - 39772846
Intron Length:
4096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGATAC
5'SS Class:
major
3'SS Sequence:
CCTTCTTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
67.6
31.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.54
1
74.9
27.6
Minor 5ss
40.1
-1.1
3.1
52.4
39.8
Minor BPS
53
0.17
1.7
70.74
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018207
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047784
39768330 - 39780762
12433
ENSAPLT00000028509
39768330 - 39780762
12433