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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39816046_39816932_R

Intron Information:

Intron Rank:
138625
Intron Class:
major
Intron Phase:
Intron Coordinates:
39816046 - 39816932
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATATATTGCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCTCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
62.4
0.28
1
55
44.7
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
60.2
0.4
1.9
83.08
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022069
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047024
39815758 - 39817748
1991