Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39883941_39903984_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39883941 - 39903984

Intron Length:

20044

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCCGG

5'SS Class:

major

3'SS Sequence:

TTTCCCAACACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

TTTTTCCCAACA

Flanking Amino Acid:

VRVFISANPEDTIAERNALR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.2

54.5

49.7

Major BPS

69.5

0.48

73.5

28.6

Major PPT

0.49

0.9

66.3

33.3

Minor 5ss

42.8

-0.8

2.9

56.8

47.4

Minor BPS

62.5

0.39

1.9

80.29

35.2

Associated Gene:

Gene:

NWD2

Ensembl Gene ID:

ENSAPLG00000004933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028597

39883790 - 39912649

28860

ENSAPLT00000005085

39883790 - 39939744

55955