Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39909114_39912541_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39909114 - 39912541

Intron Length:

3428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTGGGTATA

5'SS Class:

major

3'SS Sequence:

CGCCTTGGTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

CAGTACTAACCT

Flanking Amino Acid:

LKSSAGPCFVMKEVARSSAL

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.35

1.1

68.8

37.4

Major BPS

76.8

0.67

0.9

75.9

Major PPT

65.9

0.36

59.4

40.7

Minor 5ss

-1.7

3.2

47.2

42.9

Minor BPS

45.5

-0.2

2.1

61.57

47.9

Associated Gene:

Gene:

NWD2

Ensembl Gene ID:

ENSAPLG00000004933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028597

39883790 - 39912649

28860