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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39909114_39931663_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
39909114 - 39931663
Intron Length:
22550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
TGCAAATACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCCTGCAAAT
Flanking Amino Acid:
LKSSAGPCFVGLLGEKYGNI
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.1
68.8
37.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
58.3
0.19
1
50.3
41.8
Minor 5ss
35
-1.7
3.2
47.2
42.9
Minor BPS
47.7
-0.1
2.2
75.04
41.5

Associated Gene:

Gene:
NWD2
Ensembl Gene ID:
ENSAPLG00000004933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005085
39883790 - 39939744
55955