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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39931868_39933161_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39931868 - 39933161
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TACTGTTTAACT
Flanking Amino Acid:
SEMLKSYQNTMESSSNSMNE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
66.3
0.37
1.2
68.7
40.5
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
66.9
0.61
1.8
80.6
41.6

Associated Gene:

Gene:
NWD2
Ensembl Gene ID:
ENSAPLG00000004933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005085
39883790 - 39939744
55955