About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39934177_39935808_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39934177 - 39935808
Intron Length:
1632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ACTAACTAAATC
Flanking Amino Acid:
TLLLAEVAKKAYSWLQEEMG
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
79.2
0.72
1
75
40
Major PPT
71.6
0.49
0.9
62.7
38.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
48.4
-0.1
1.9
58.27
40.8

Associated Gene:

Gene:
NWD2
Ensembl Gene ID:
ENSAPLG00000004933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005085
39883790 - 39939744
55955