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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_399526_401200_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
399526 - 401200
Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGGATTGTAAAG
Flanking Amino Acid:
CATGEHFTIEFENLVESDEG
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.9
0.94
0.6
88.3
21.4
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
42.3
-0.7
2
45.2
41.3

Associated Gene:

Gene:
AP1AR
Ensembl Gene ID:
ENSAPLG00000013936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014532
395267 - 410869
15603