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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3996172_3997214_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3996172 - 3997214
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
GTCATCTCAATG
Flanking Amino Acid:
PVNGDPVSPEVDSWYFFPK*
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
49.3
-0.1
1.6
52.61
42.4

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799