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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3997255_4002165_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3997255 - 4002165
Intron Length:
4911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TGAAACAAAACA
Flanking Amino Acid:
EEDARSIVQSAPVPVNGDPV
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
79.1
36.4
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
82
0.72
0.8
77.2
37.1
Minor 5ss
36.3
-1.5
3.3
49.4
46.6
Minor BPS
43.8
-0.4
2
56.36
41.7

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799