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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_39984824_39985892_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39984824 - 39985892
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACAG
5'SS Class:
major
3'SS Sequence:
TTCCTTACTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCCTTACTC
Flanking Amino Acid:
MGCRCCKMIQSYIFDPEEVQ
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
56
43
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.8
0.72
0.8
74
35.4
Minor 5ss
29.6
-2.3
3.3
38.4
46.6
Minor BPS
78
0.86
1.5
86.11
32.2

Associated Gene:

Gene:
C4orf19
Ensembl Gene ID:
ENSAPLG00000027520
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035166
39984792 - 39986844
2053