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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40001709_40002201_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40001709 - 40002201
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTGGACACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
TTCTTTTGGACA
Flanking Amino Acid:
LGEVTVLSVGRFRVTKVEHK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
64.3
0.32
1
59.7
41.3
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
59.4
0.29
1.4
69.99
36.5

Associated Gene:

Gene:
RELL1
Ensembl Gene ID:
ENSAPLG00000008800
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009152
40001528 - 40011507
9980