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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40002442_40004947_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40002442 - 40004947
Intron Length:
2506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTCCTTTATG
Flanking Amino Acid:
VADNSVLEPESPSSPATPGS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
78
29.6
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
67.6
0.41
1.7
71.2
42.2

Associated Gene:

Gene:
RELL1
Ensembl Gene ID:
ENSAPLG00000008800
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009152
40001528 - 40011507
9980