About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40006308_40007755_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40006308 - 40007755
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTTTCACA
Flanking Amino Acid:
IEEEKPEEKIEMNETAHENS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
79.8
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.6
0.85
0.7
83.3
25.1
Minor 5ss
41.1
-1
2.9
57.5
46.8
Minor BPS
68.2
0.57
1.7
80.59
35.2

Associated Gene:

Gene:
RELL1
Ensembl Gene ID:
ENSAPLG00000008800
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009152
40001528 - 40011507
9980