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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4003742_4005543_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4003742 - 4005543
Intron Length:
1802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGATA
5'SS Class:
major
3'SS Sequence:
TGATGTAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTGATG
Flanking Amino Acid:
FAFNGEFKGKDFAVEIIKST
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
0.9
77.2
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
53.2
0.07
1.1
46
44.8
Minor 5ss
29.8
-2.3
3.3
39
46.4
Minor BPS
82.4
0.88
1.1
82.57
32

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799